miRBase entry: dre-mir-363

Stem-loop dre-mir-363


Accession
MI0002067
Description
Danio rerio dre-mir-363 precursor miRNA
Gene family
MIPF0000138; mir-363

Literature search
2 open access papers mention dre-mir-363
(6 sentences)

Sequence

6844 reads, 374 reads per million, 11 experiments
uaaaugcaaauauuugucuugcuguuuuCGGGUGGAUGACUCUGCAAUUUUauuagugauggaaaaacuucaauaaaAAUUGCACGGUAUCCAUCUGUAauccgcuggauuccauuaccugcguuug
((((((((..((...((((.((.(.((.((((((((((.((.(((((((((.....(((.(......).)))...))))))))).)))))))))))).)).).)).)))).....))..))))))))

Structure
        aa  --uuu    u  u u  u          A  C         auuag   u ga 
uaaaugca  ua     gucu gc g uu CGGGUGGAUG CU UGCAAUUUU     uga g  a
||||||||  ||     |||| || | || |||||||||| || |||||||||     ||| |   
guuugcgu  au     uagg cg c aA GUCUACCUAU GG ACGUUAAaa     acu c  a
        cc  uaccu    u  c u  U          -  C         --aua   u aa 


Annotation confidence High
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Genome context
chr14: 31466671-31466797 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from dre-mir-363
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-363-3p

Accession MIMAT0001874
Description Danio rerio dre-miR-363-3p mature miRNA
Sequence 78 - AAUUGCACGGUAUCCAUCUGUA - 99
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-363-5p

Accession MIMAT0031992
Description Danio rerio dre-miR-363-5p mature miRNA
Sequence 29 - CGGGUGGAUGACUCUGCAAUUUU - 51
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293