miRBase entry: dre-mir-365-1

Stem-loop dre-mir-365-1


Accession
MI0002068
Description
Danio rerio dre-mir-365-1 precursor miRNA
Gene family
MIPF0000061; mir-365

Literature search
2 open access papers mention dre-mir-365-1
(3 sentences)

Sequence

962 reads, 97 reads per million, 8 experiments
ccgcagggagaaugaggggcuuuugggggcacuuguguuucaguuucaccaucaUAAUGCCCCUAAAAAUCCUUAUugcucuugcacug
..((((((..((((((((..(((((((((((.(((((...............)))))))))))))))).))))))))..))))))....

Structure
--cc      ag        gc           c     uuucag 
    gcaggg  aaugaggg  uuuugggggca uugug      u
    ||||||  ||||||||  ||||||||||| |||||      u
    cguucu  uUAUUCCU  AAAAUCCCCGU AAUac      u
guca      cg        -A           -     uaccac 


Annotation confidence Not enough data
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Genome context
chr3: 43716827-43716915 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-365-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-365

Accession MIMAT0001875
Description Danio rerio dre-miR-365 mature miRNA
Sequence 55 - UAAUGCCCCUAAAAAUCCUUAU - 76
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293