miRBase entry: dre-mir-430a-11

Stem-loop dre-mir-430a-11


Accession
MI0002120
Description
Danio rerio dre-mir-430a-11 precursor miRNA
Gene family
MIPF0000003; mir-430

Literature search
38 open access papers mention dre-mir-430a-11
(204 sentences)

Sequence

2381782 reads, 78893 reads per million, 5 experiments
gucucuaucgguACCCUCACAAAAGCACUGACUuugaugcuguaauuggUAAGUGCUAUUUGUUGGGGUAGuuucaagugac
(((.((...(.((((((.(((((((((((.(((..(((......)))))).)))))).))))).)))))).)....)).)))

Structure
   u  -auc g      C     -      G   uu   gc 
guc cu    g uACCCU ACAAA AGCACU ACU  gau  u
||| ||    | |||||| ||||| |||||| |||  |||   
cag ga    u AUGGGG UGUUU UCGUGA Ugg  uua  g
   u  acuu G      U     A      A   --   au 


Annotation confidence High
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Genome context
chr4: 28701424-28701505 [+]
Clustered miRNAs
57 other miRNAs are < 10 kb from dre-mir-430a-11
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-430a-3p

Accession MIMAT0001423
Description Danio rerio dre-miR-430a-3p mature miRNA
Sequence 50 - UAAGUGCUAUUUGUUGGGGUAG - 71
Evidence experimental
cloned [1-2]
Database links
Predicted targets

Mature dre-miR-430a-11-5p

Accession MIMAT0031996
Description Danio rerio dre-miR-430a-11-5p mature miRNA
Sequence 13 - ACCCUCACAAAAGCACUGACU - 33
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293

  2. PubMed ID: 15774722
    MicroRNAs regulate brain morphogenesis in zebrafish
    "Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF"
    "Science (2005) 308:833-838