Stem-loop dre-mir-430i-2

Accession

MI0002140

Description

Danio rerio dre-mir-430i-2 precursor miRNA miR-430

Gene
family

RF01413; miR-430

Literature search

38 open access papers mention dre-mir-430i-2
(187 sentences)

Sequence

4145 reads, 1014 reads per million, 5 experiments

gucucuaucgguACCCUCACAAAAGCACUGACUuugaugcuguauuuggUAAGUGCUAUUUGUUGGCGUAGuuucaagugac
(((.((...(.(((((..(((((((((((.(((..((((...)))).))).)))))).))))).)).))).)....)).)))

Structure

   u  -auc g   -  UC     -      G   uu    c 
guc cu    g uAC CC  ACAAA AGCACU ACU  gaug  
||| ||    | ||| ||  ||||| |||||| |||  |||| u
cag ga    u AUG GG  UGUUU UCGUGA Ugg  uuau  
   u  acuu G   C  -U     A      A   -u    g 

Annotation confidence High

Genome context

chr4: 28702050-28702131 [+]

Clustered miRNAs

57 other miRNAs are < 10 kb from dre-mir-430i-2

Mature dre-miR-430i-3p

• Accession: MIMAT0001880
• Description: Danio rerio dre-miR-430i-3p mature miRNA
• Sequence: 50 - UAAGUGCUAUUUGUUGGCGUAG - 71
• Evidence: experimental ; cloned [1]

Mature dre-miR-430i-5p

• Accession: MIMAT0032003
• Description: Danio rerio dre-miR-430i-5p mature miRNA
• Sequence: 13 - ACCCUCACAAAAGCACUGACU - 33
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293