Stem-loop dre-mir-430i-3

Accession

MI0002141

Description

Danio rerio dre-mir-430i-3 precursor miRNA

Gene family

MIPF0000003; mir-430

Literature search

38 open access papers mention dre-mir-430i-3
(187 sentences)

Sequence

4159 reads, 1055 reads per million, 5 experiments

gucucuaucgguACCCUCACAAAAGCACUGACUuugaugcuguauuuggUAAGUGCUAUUUGUUGGCGUAGuuucaagugac
(((.((...(.(((((..(((((((((((.(((..((((...)))).))).)))))).))))).)).))).)....)).)))

Structure

   u  -auc g   -  UC     -      G   uu    c 
guc cu    g uAC CC  ACAAA AGCACU ACU  gaug  
||| ||    | ||| ||  ||||| |||||| |||  |||| u
cag ga    u AUG GG  UGUUU UCGUGA Ugg  uuau  
   u  acuu G   C  -U     A      A   -u    g 

Annotation confidence High

Genome context

chr4: 28705553-28705634 [+]

Clustered miRNAs

48 other miRNAs are < 10 kb from dre-mir-430i-3

Mature dre-miR-430i-3p

• Accession: MIMAT0001880
• Description: Danio rerio dre-miR-430i-3p mature miRNA
• Sequence: 50 - UAAGUGCUAUUUGUUGGCGUAG - 71
• Evidence: experimental ; cloned [1]

Mature dre-miR-430i-5p

• Accession: MIMAT0032003
• Description: Danio rerio dre-miR-430i-5p mature miRNA
• Sequence: 13 - ACCCUCACAAAAGCACUGACU - 33
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293