Stem-loop sequence ptc-MIR156j

AccessionMI0002193 (change log)
DescriptionPopulus trichocarpa miR156j stem-loop
Gene family MIPF0000008; MIR156
Literature search

9 open access papers mention ptc-MIR156j
(85 sentences)

Stem-loop 
   ----     uguugu         -              u  -  au     aug 
5'     gguga      ugacagaag auagagagcacaga ga ug  augca   g
       |||||      ||||||||| |||||||||||||| || ||  |||||    
3'     ucacu      acugucuuc uaucucucguguuu cu ac  uacgu   a
   acuu     ------         g              c  c  cc     cuc
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000351.2: 4013699-4013798 [+]
intergenic
Database links

Mature sequence ptc-miR156j

Accession MIMAT0001899
Sequence

11 -  

uugacagaagauagagagcac

 - 31

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Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).