Stem-loop sequence ptc-MIR156k

AccessionMI0002194 (change log)
DescriptionPopulus trichocarpa miR156k stem-loop
Gene family MIPF0000008; MIR156
Literature search

9 open access papers mention ptc-MIR156k
(78 sentences)

Stem-loop 
   uuaugca  c          -   gg      ac  ug   u   u    a 
5'        ug ugacagaaga gag  agcaca  cc  uaa agc aaag g
          || |||||||||| |||  ||||||  ||  ||| ||| |||| a
3'        ac acugucuucu cuc  ucgugu  gg  guu ucg uuuc g
   --aacca  c          u   uu      ca  uu   u   -    u
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000347.2: 11956115-11956215 [-]
intergenic
Database links

Mature sequence ptc-miR156k

Accession MIMAT0001900
Sequence

11 -  

ugacagaagagagggagcac

 - 30

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Evidence by similarity; MI0000178

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).