Stem-loop sequence ptc-MIR159c

Accession

MI0002197 (change log)

Description

Populus trichocarpa miR159c stem-loop

Stem-loop

   gauua   ag           ga       u     -u   u  --       auu     g  a  c    g -u  a   u       a  a 
5'      ggg  uggagcuccuu  aguccaa agagg  ucu gc  uggguag   aagcu cu ag uaug a  cc cag ccuaucu uc a
        |||  |||||||||||  ||||||| |||||  ||| ||  |||||||   ||||| || || |||| |  || ||| ||||||| ||  
3'      ccc  aucucgaggga  uuagguu uuucc  aga ug  auccguu   uucga ga uc auac u  gg guu ggauagg ag c
   -aaua   aa           ag       -     cu   u  ua       -au     g  c  u    g uc  c   u       a  c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000350.2: 6596931-6597131 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR159c

• ptc-MIR159c: CM000350.2: 6596931-6597131 [+]
• ptc-MIR159e: CM000350.2: 6601853-6602044 [+]
• ptc-MIR159d: CM000350.2: 6603532-6603725 [+]

Database links

• miRBase Tracker:MI0002197