Stem-loop sequence ptc-MIR159d

AccessionMI0002198 (change log)
DescriptionPopulus trichocarpa miR159d stem-loop
Gene family MIPF0000010; MIR159
Literature search

9 open access papers mention ptc-MIR159d
(47 sentences)

Stem-loop 
   uuguaaauu        uu   ug      --       aa    a ug    uacu     g    uu    g u   uc       -c  -ag   au 
5'          ugggagcu  cuu  guucaa  aaugagg  agaa g  ggua    cgucu cuug  caug a acc  uggguug  gc   gau  a
            ||||||||  |||  ||||||  |||||||  |||| |  ||||    ||||| ||||  |||| | |||  |||||||  ||   |||   
3'          auccucga  gaa  uagguu  uugcuuu  ucuu c  ccgu    gcaga gaac  guac u ugg  auucgac  cg   uug  u
   -cuauguac        gg   gu      cu       cc    c gu    ---u     g    cg    g u   ga       au  gga   au
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000350.2: 6603532-6603725 [+]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR159d
ptc-MIR159cCM000350.2: 6596931-6597131 [+]
ptc-MIR159eCM000350.2: 6601853-6602044 [+]
ptc-MIR159dCM000350.2: 6603532-6603725 [+]
Database links

Mature sequence ptc-miR159d

Accession MIMAT0001904
Sequence

165 -  

cuuggauugaagggagcuccu

 - 185

Get sequence
Evidence by similarity; MI0000189

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).