Stem-loop sequence ptc-MIR159e

AccessionMI0002199 (change log)
DescriptionPopulus trichocarpa miR159e stem-loop
Gene family MIPF0000010; MIR159
Literature search

9 open access papers mention ptc-MIR159e
(47 sentences)

Stem-loop 
   accauuaa          g  -        au ug      ggugau   a      u   g   cuu    aau    gug   g     -  -a  c 
5'         auaggagcuu cu cacuccag  c  aaagga      agg aaccac ucu cua   caug   accc   ggu ugcgc gu  gc a
           |||||||||| || ||||||||  |  ||||||      ||| |||||| ||| |||   ||||   ||||   ||| ||||| ||  ||  
3'         uauccucgag ga gugggguu  g  uuuucu      ucc uuggug aga gau   guac   uggg   ucg acgcg cg  ug u
   -acccuga          g  a        cu gu      ---agu   g      u   g   cgu    guc    -aa   g     u  ag  g
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000350.2: 6601853-6602044 [+]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR159e
ptc-MIR159cCM000350.2: 6596931-6597131 [+]
ptc-MIR159eCM000350.2: 6601853-6602044 [+]
ptc-MIR159dCM000350.2: 6603532-6603725 [+]
Database links

Mature sequence ptc-miR159e

Accession MIMAT0001905
Sequence

163 -  

cuuggggugaagggagcuccu

 - 183

Get sequence
Evidence by similarity; MI0001086

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).