Stem-loop sequence ptc-MIR160a

AccessionMI0002201 (change log)
DescriptionPopulus trichocarpa miR160a stem-loop
Gene family MIPF0000032; MIR160
Literature search

6 open access papers mention ptc-MIR160a
(23 sentences)

Stem-loop 
   acau    u    c       c          aa    -  a       uuu 
5'     gggu augc uggcucc uguaugccac  gcaa ag ccaaucu   g
       |||| |||| ||||||| ||||||||||  |||| || |||||||    
3'     cuca uacg accgagg gcgugcggug  cguu uc gguuaga   u
   -ucu    -    a       a          gc    g  -       uuu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000337.2: 43414059-43414160 [+]
intergenic
Database links

Mature sequence ptc-miR160a

Accession MIMAT0001907
Sequence

11 -  

ugccuggcucccuguaugcca

 - 31

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Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).