Stem-loop sequence ptc-MIR160c

Accession

MI0002203 (change log)

Description

Populus trichocarpa miR160c stem-loop

Gene family

MIPF0000032; MIR160

Literature search

6 open access papers mention ptc-MIR160c
(22 sentences)

Stem-loop

   auauuau      c       cu          ug a   c   c   u 
5'        augugc uggcucc  guaugccauu  c gag cca cgg u
          |||||| |||||||  ||||||||||  | ||| ||| |||  
3'        uauacg accgagg  uaugcgguag  g cuc ggu gcu c
   --acacu      u       ag          gu c   c   a   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000346.2: 19585212-19585309 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0002203

Mature sequence ptc-miR160c-5p

• Accession: MIMAT0001909
• Previous IDs: ptc-miR160c
• Sequence: 11 - ugccuggcucccuguaugcca - 31
• Evidence: experimental; cloned [1], miRNAseq [4]

Mature sequence ptc-miR160c-3p

• Accession: MIMAT0022891
• Sequence: 72 - gcguaugaggagccaugcaua - 92
• Evidence: experimental; miRNAseq [4]

References

1. PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
4. PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).