Stem-loop sequence ptc-MIR160d

AccessionMI0002204 (change log)
DescriptionPopulus trichocarpa miR160d stem-loop
Gene family MIPF0000032; MIR160
Literature search

6 open access papers mention ptc-MIR160d
(22 sentences)

Stem-loop 
   aaau    u    c       c          -a   -a  a       cuuc 
5'     gggu augc uggcucc uguaugccac  gca  ag ccaaucu    u
       |||| |||| ||||||| ||||||||||  |||  || |||||||     
3'     cuca uacg accgagg gcgugcggug  cgu  uc gguuaga    g
   -ucu    -    a       a          gc   cg  -       uucu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000347.2: 17793833-17793935 [-]
intergenic
Database links

Mature sequence ptc-miR160d

Accession MIMAT0001910
Sequence

11 -  

ugccuggcucccuguaugcca

 - 31

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Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).