Stem-loop sequence ptc-MIR164d

AccessionMI0002215 (change log)
DescriptionPopulus trichocarpa miR164d stem-loop
Gene family MIPF0000045; MIR164
Literature search

8 open access papers mention ptc-MIR164d
(38 sentences)

Stem-loop 
   ug     c c     a  ca             --auc    -     uuc 
5'   gcuca g uggag ag  gggcacgugcaaa     cuuc ucggc   c
     ||||| | ||||| ||  |||||||||||||     |||| |||||    
3'   ugagu c accuc uc  cucgugcacguuu     gaag agucg   a
   --     a a     c  cc             cucac    u     uag
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000350.2: 9081111-9081209 [+]
intergenic
Database links

Mature sequence ptc-miR164d

Accession MIMAT0001921
Sequence

11 -  

uggagaagcagggcacgugca

 - 31

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Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).