Stem-loop sequence ptc-MIR164e

AccessionMI0002216 (change log)
DescriptionPopulus trichocarpa miR164e stem-loop
Gene family MIPF0000045; MIR164
Literature search

8 open access papers mention ptc-MIR164e
(40 sentences)

Stem-loop 
   gugag  a     a    ca         cauu        augcacacagagugagagagacauuucuugcuggag 
5'      ca gaugg gaag  gggcacgug    acuaacuc                                    u
        || ||||| ||||  |||||||||    ||||||||                                    u
3'      gu cuacc cuuc  uccguguac    ugauugag                                    a
   --cua  a     c    ug         uucu        cgacuucgguuguguuagauaucauccauucucagu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000352.2: 12933923-12934077 [+]
intergenic
Database links

Mature sequence ptc-miR164e

Accession MIMAT0001922
Sequence

11 -  

uggagaagcagggcacgugca

 - 31

Get sequence
Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
PMID:15916721 "Identification and characterization of new plant microRNAs using EST analysis" Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA Cell Res. 15:336-360(2005).
3
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
4
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).