Stem-loop sequence ptc-MIR166a

AccessionMI0002218 (change log)
DescriptionPopulus trichocarpa miR166a stem-loop
Gene family MIPF0000004; MIR166
Literature search

6 open access papers mention ptc-MIR166a
(29 sentences)

Stem-loop 
   uuu uu   a        uu      cu   g    -cu    -----g    u     uuua       uga ug    u  uuua 
5'    c  uug ggggaaug  gucugg  cga guca   aaug      gauc augau    ucucaau   u  auuu cu    a
      |  ||| ||||||||  ||||||  ||| ||||   ||||      |||| |||||    |||||||   |  |||| ||     
3'    g  aac ccccuuac  cggacc  gcu uagu   uuau      cuag uacua    agaguua   a  uaaa ga    a
   -uu uu   c        uu      ag   g    aau    auucaa    -     -uag       --- gu    u  ucuu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000337.2: 8837231-8837394 [+]
intergenic
Database links

Mature sequence ptc-miR166a

Accession MIMAT0001924
Sequence

135 -  

ucggaccaggcuucauucccc

 - 155

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Evidence by similarity; MI0000203

References

1
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).