Stem-loop sequence ptc-MIR166d

AccessionMI0002221 (change log)
DescriptionPopulus trichocarpa miR166d stem-loop
Gene family MIPF0000004; MIR166
Literature search

6 open access papers mention ptc-MIR166d
(23 sentences)

   cg  a             uu g    cu        a    aaga     cu 
5'   ug guugaggggaaug  g cugg  cgaagcuu agca    guuuu  c
     || |||||||||||||  | ||||  |||||||| ||||    |||||  u
3'   ac caacuccccuuac  c gacc  gcuucgga uugu    caaag  c
   ua  -             uu g    ag        a    -caa     aa 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000341.2: 4841691-4841795 [-]
Clustered miRNAs
< 10kb from ptc-MIR166d
ptc-MIR166dCM000341.2: 4841691-4841795 [-]
ptc-MIR166pCM000341.2: 4841446-4841591 [-]
Database links

Mature sequence ptc-miR166d

Accession MIMAT0001927

76 - 


 - 96

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Evidence by similarity; MI0000205


"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D (2005).
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).