Stem-loop sequence ptc-MIR166d

Accession

MI0002221 (change log)

Description

Populus trichocarpa miR166d stem-loop

Gene family

MIPF0000004; MIR166

Literature search

6 open access papers mention ptc-MIR166d
(23 sentences)

Stem-loop

   cg  a             uu g    cu        a    aaga     cu 
5'   ug guugaggggaaug  g cugg  cgaagcuu agca    guuuu  c
     || |||||||||||||  | ||||  |||||||| ||||    |||||  u
3'   ac caacuccccuuac  c gacc  gcuucgga uugu    caaag  c
   ua  -             uu g    ag        a    -caa     aa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000341.2: 4841691-4841795 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR166d

• ptc-MIR166d: CM000341.2: 4841691-4841795 [-]
• ptc-MIR166p: CM000341.2: 4841446-4841591 [-]

Database links

• RNAcentral:URS00007978DD_3694
• miRBase Tracker:MI0002221

Mature sequence ptc-miR166d

• Accession: MIMAT0001927
• Sequence: 76 - ucggaccaggcuucauucccc - 96
• Evidence: by similarity; MI0000205

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).