Stem-loop sequence ptc-MIR166f

Accession

MI0002223 (change log)

Description

Populus trichocarpa miR166f stem-loop

Gene family

MIPF0000004; MIR166

Literature search

6 open access papers mention ptc-MIR166f
(23 sentences)

Stem-loop

   g    g            uu g    cu        a    aaga     cu 
5'  gugu uugaggggaaug  g cugg  cgaagcuu agca    guuuc  a
    |||| ||||||||||||  | ||||  |||||||| ||||    |||||  a
3'  uaca aacuccccuuac  c gacc  gcuucgga uugu    caaag  c
   a    -            uu g    ag        a    -caa     ua 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000343.2: 3117083-3117187 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR166f

• ptc-MIR166f: CM000343.2: 3117083-3117187 [-]
• ptc-MIR166q: CM000343.2: 3116836-3116986 [-]

Database links

• RNAcentral:URS00007970B9_3694
• miRBase Tracker:MI0002223

Mature sequence ptc-miR166f

• Accession: MIMAT0001929
• Sequence: 76 - ucggaccaggcuucauucccc - 96
• Evidence: by similarity; MI0000205

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).