Stem-loop sequence ptc-MIR166f

AccessionMI0002223 (change log)
DescriptionPopulus trichocarpa miR166f stem-loop
Gene family MIPF0000004; MIR166
Literature search

6 open access papers mention ptc-MIR166f
(23 sentences)

   g    g            uu g    cu        a    aaga     cu 
5'  gugu uugaggggaaug  g cugg  cgaagcuu agca    guuuc  a
    |||| ||||||||||||  | ||||  |||||||| ||||    |||||  a
3'  uaca aacuccccuuac  c gacc  gcuucgga uugu    caaag  c
   a    -            uu g    ag        a    -caa     ua 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000343.2: 3117083-3117187 [-]
Clustered miRNAs
< 10kb from ptc-MIR166f
ptc-MIR166fCM000343.2: 3117083-3117187 [-]
ptc-MIR166qCM000343.2: 3116836-3116986 [-]
Database links

Mature sequence ptc-miR166f

Accession MIMAT0001929

76 - 


 - 96

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Evidence by similarity; MI0000205


"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D (2005).
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).