Stem-loop sequence ptc-MIR166k

AccessionMI0002228 (change log)
DescriptionPopulus trichocarpa miR166k stem-loop
Gene family MIPF0000004; MIR166
Literature search

6 open access papers mention ptc-MIR166k
(23 sentences)

Stem-loop 
   ucuuuu   a        uu      cu   g      ---u   uc        -  --uc  -   --u    c 
5'       uug ggggaaug  gucugg  cga gacuuu    ugu  aucaaucu aa    ga acu   ucua c
         ||| ||||||||  ||||||  ||| ||||||    |||  |||||||| ||    || |||   ||||  
3'       aac ccccuuac  cggacc  gcu uuggga    gca  uaguuaga uu    cu uga   agau u
   -uuacu   c        uu      ag   g      uuau   -c        a  uauu  a   ucu    g
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000350.2: 7412220-7412362 [+]
intergenic
Database links

Mature sequence ptc-miR166k

Accession MIMAT0001934
Sequence

114 -  

ucggaccaggcuucauucccc

 - 134

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Evidence by similarity; MI0000204

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).