Stem-loop ptc-MIR166l

Accession

MI0002229

Description

Populus trichocarpa ptc-MIR166l precursor miRNA

Literature search

6 open access papers mention ptc-MIR166l
(22 sentences)

Sequence

41708001 reads, 588163.0 reads per million, 9 experiments

uaacuuuuguggUGAAUGUUGUCUGGUUCAAGGcauggccaccacaucucuuggugaauauauguccUCGGACCAGGCUUCAUUCCCCucaauuaau
......(((.((.(((((..(((((((((.(((((((..(((((.......)))))....)))).))).)))))))))..))))).)).))).....

Structure

uaacuu   u  U     UU         A   -    --gc     ca 
      uug gg GAAUG  GUCUGGUUC AGG caug    cacca  u
      ||| || |||||  ||||||||| ||| ||||    |||||  c
      aac CC CUUAC  CGGACCAGG Ucc guau    guggu  u
-uaauu   u  C     UU         C   u    auaa     uc 

Annotation confidence High

Genome context

CM000351.2: 541777-541873 [-]

Mature ptc-miR166l-5p

• Accession: MIMAT0055590
• Description: Populus trichocarpa ptc-miR166l-5p mature miRNA
• Sequence: 13 - UGAAUGUUGUCUGGUUCAAGG - 33
• Evidence: experimental ; unknown

Mature ptc-miR166l-3p

• Accession: MIMAT0001935
• Description: Populus trichocarpa ptc-miR166l-3p mature miRNA
• Sequence: 68 - UCGGACCAGGCUUCAUUCCCC - 88
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604