Stem-loop sequence ptc-MIR167a

Accession

MI0002235 (change log)

Description

Populus trichocarpa miR167a stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

6 open access papers mention ptc-MIR167a
(51 sentences)

Stem-loop

   cac      u      ug   g          --  -      cuu 
5'    uagcag ugaagc  cca caugaucuaa  cu uccuug   c
      |||||| ||||||  ||| ||||||||||  || ||||||   u
3'    guuguc acuuug  ggu guacuagauu  gg aggaac   u
   --a      c      gu   -          ua  u      uau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000338.2: 3062198-3062286 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR167a

• ptc-MIR167b: CM000338.2: 3064788-3064883 [-]
• ptc-MIR167a: CM000338.2: 3062198-3062286 [-]

Database links

• miRBase Tracker:MI0002235

Mature sequence ptc-miR167a

• Accession: MIMAT0001941
• Sequence: 11 - ugaagcugccagcaugaucua - 31
• Evidence: by similarity; MI0000208

References

1. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).