Stem-loop sequence ptc-MIR167c

Accession

MI0002237 (change log)

Description

Populus trichocarpa miR167c stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

6 open access papers mention ptc-MIR167c
(52 sentences)

Stem-loop

   cac      u           g          auuaa  -     cu 
5'    uagcag ugaagcugcca caugaucuaa     cc uccuu  u
      |||||| ||||||||||| ||||||||||     || |||||  u
3'    gucguc acuuugauggu guacuagauu     gg aggaa  a
   --a      c           -          ----a  u     cu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000341.2: 22458162-22458250 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR167c

• ptc-MIR167c: CM000341.2: 22458162-22458250 [+]
• ptc-MIR6469: CM000341.2: 22463492-22463743 [-]

Database links

• RNAcentral:URS00007B6B4E_3694
• miRBase Tracker:MI0002237

Mature sequence ptc-miR167c

• Accession: MIMAT0001943
• Sequence: 11 - ugaagcugccagcaugaucua - 31
• Evidence: by similarity; MI0000208

References

1. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).