Stem-loop sequence ptc-MIR168a

AccessionMI0002243 (change log)
DescriptionPopulus trichocarpa miR168a stem-loop
Gene family MIPF0000081; MIR168
Literature search

6 open access papers mention ptc-MIR168a
(14 sentences)

Stem-loop 
   ggu          c          u     a ug     g ---ga    auugccagauggcucgacaugacugguuguug 
5'    cucugauucg uuggugcagg cggga c  auucg c     uuug                                u
      |||||||||| |||||||||| ||||| |  ||||| |     ||||                                 
3'    gaggcuaagu aacuacguuc gcccu g  uaagc g     aaac                                g
   --g          c          c     a gu     - auaag    aaaaaaaaggacaaaggaaggaaaagaaaaag
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000339.2: 4412270-4412429 [-]
intergenic
Database links

Mature sequence ptc-miR168a-5p

Accession MIMAT0001949
Previous IDsptc-miR168a
Sequence

11 -  

ucgcuuggugcaggucgggaa

 - 31

Get sequence
Evidence experimental; cloned [1], miRNAseq [4]

Mature sequence ptc-miR168a-3p

Accession MIMAT0022896
Sequence

134 -  

cccgccuugcaucaacugaau

 - 154

Get sequence
Evidence experimental; miRNAseq [4]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
4
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).