Stem-loop sequence ptc-MIR168b

AccessionMI0002244 (change log)
DescriptionPopulus trichocarpa miR168b stem-loop
Gene family MIPF0000081; MIR168
Literature search

5 open access papers mention ptc-MIR168b
(11 sentences)

Stem-loop 
   gg    ua     c          u     a ug    ---gg --gauu     -   ag        ac 
5'   ucuc  auucg uuggugcagg cggga c  auuc     c      ugauu gcc  auggcuaa  a
     ||||  ||||| |||||||||| ||||| |  ||||     |      ||||| |||  ||||||||   
3'   agag  uaagu aacuacguuc gcccu g  uaag     g      auuaa cgg  ugucgguu  c
   --    gc     c          c     a gu    agaaa aaaaau     a   ag        ag
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000340.2: 22942209-22942344 [-]
intergenic
Database links

Mature sequence ptc-miR168b-5p

Accession MIMAT0001950
Previous IDsptc-miR168b
Sequence

11 -  

ucgcuuggugcaggucgggaa

 - 31

Get sequence
Evidence experimental; cloned [1], miRNAseq [5]

Mature sequence ptc-miR168b-3p

Accession MIMAT0022897
Sequence

110 -  

cccgccuugcaucaacugaau

 - 130

Get sequence
Evidence experimental; miRNAseq [5]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
PMID:15916721 "Identification and characterization of new plant microRNAs using EST analysis" Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA Cell Res. 15:336-360(2005).
3
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
4
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
5
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).