Stem-loop ptc-MIR169aa

Accession

MI0002246

Description

Populus trichocarpa ptc-MIR169aa precursor miRNA

Literature search

9 open access papers mention ptc-MIR169aa
(13 sentences)

Sequence

7397 reads, 125.0 reads per million, 9 experiments

guagagaUCGAGCCAAGAAUGACUUGUCggcaggcuagcaauugcuacguauagagcaauauguaugcuagaaugaguauuccgCCAGGUCGUUCUUGGCUCAACUUug
.(((((...(((((((((((((((((.(((((..((((((((((((.(.....))))))).....))))))..))......))).)))))))))))))))))..)))))

Structure

g     aUC                 U   ------  gg      -----      a g 
 uagag   GAGCCAAGAAUGACUUG Cgg      ca  cuagca     auugcu c u
 |||||   ||||||||||||||||| |||      ||  ||||||     |||||| | a
 guUUC   CUCGGUUCUUGCUGGAC gcc      gu  gaucgu     uaacga g u
-     -AA                 C   uuauga  aa      augua      - a 

Annotation confidence Medium

Genome context

Unknown

Mature ptc-miR169aa-5p

• Accession: MIMAT0055597
• Description: Populus trichocarpa ptc-miR169aa-5p mature miRNA
• Sequence: 8 - UCGAGCCAAGAAUGACUUGUC - 28
• Evidence: experimental ; unknown

Mature ptc-miR169aa-3p

• Accession: MIMAT0001952
• Description: Populus trichocarpa ptc-miR169aa-3p mature miRNA
• Sequence: 85 - CCAGGUCGUUCUUGGCUCAACUU - 107
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604