Stem-loop sequence ptc-MIR169ac

AccessionMI0002248 (change log)
DescriptionPopulus trichocarpa miR169ac stem-loop
Gene family MIPF0000012; MIR169_1
Literature search

9 open access papers mention ptc-MIR169ac
(12 sentences)

Stem-loop 
   uc    uu           c    u     caauauguaucgugagcguuucca 
5'   uugu  guagccaagga gacu gccca                        a
     ||||  ||||||||||| |||| |||||                         
3'   gacg  uaucgguuccu cuga cgggu                        u
   ua    --           -    -     uuuguugguucauacuccaacguu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000341.2: 6551950-6552055 [+]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR169ac
ptc-MIR169afCM000341.2: 6547979-6548085 [-]
ptc-MIR169yCM000341.2: 6551729-6551851 [+]
ptc-MIR169acCM000341.2: 6551950-6552055 [+]
Database links

Mature sequence ptc-miR169ac

Accession MIMAT0001954
Sequence

10 -  

uagccaaggacgacuugccca

 - 30

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Evidence by similarity; MI0000212

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).