Stem-loop sequence ptc-MIR169af

AccessionMI0002251 (change log)
DescriptionPopulus trichocarpa miR169af stem-loop
Gene family MIPF0000012; MIR169_1
Literature search

9 open access papers mention ptc-MIR169af
(12 sentences)

Stem-loop 
   cu    u g         ac a        cc    ucucaguu  -     aua 
5'   uguu g uagccaagg  g cuugccca  acca        gg gucca   u
     |||| | |||||||||  | ||||||||  ||||        || |||||   a
3'   acag u aucgguucc  c gaacgggu  uggu        cc cgggu   u
   --    u g         -a -        uu    -uuaccuu  a     cau
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000341.2: 6547979-6548085 [-]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR169af
ptc-MIR169acCM000341.2: 6551950-6552055 [+]
ptc-MIR169yCM000341.2: 6551729-6551851 [+]
ptc-MIR169afCM000341.2: 6547979-6548085 [-]
Database links

Mature sequence ptc-miR169af

Accession MIMAT0001957
Sequence

10 -  

uagccaaggacgacuugccca

 - 30

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Evidence by similarity; MI0000212

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).