Stem-loop sequence ptc-MIR169f

AccessionMI0002256 (change log)
DescriptionPopulus trichocarpa miR169f stem-loop
Gene family MIPF0000037; MIR169_2
Literature search

9 open access papers mention ptc-MIR169f
(14 sentences)

Stem-loop 
   uuau  g u c     ag             aauaa    -      a   cuauagcuaugguauuuuucauccuagguuuggcuauauauauauauauauauagccaguuaauugcuau 
5'     gu g g agcca  gaugacuugccgg     gcua ugauca uag                                                                      a
       || | | |||||  |||||||||||||     |||| |||||| |||                                                                      a
3'     ca c c ucggu  cuacugaacggcu     ugau acuagu auc                                                                      a
   --cu  a u a     cu             --aac    g      -   cuccaccuuguaguuguaaguuacuacacacacagacacacgucuguauauuuuguauuuacacgacucu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000353.2: 12354617-12354855 [+]
intergenic
Database links

Mature sequence ptc-miR169f

Accession MIMAT0001962
Sequence

11 -  

cagccaaggaugacuugccgg

 - 31

Get sequence
Evidence by similarity; MI0000212

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).