Stem-loop sequence ptc-MIR169i

Accession

MI0002259 (change log)

Description

Populus trichocarpa miR169i stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

9 open access papers mention ptc-MIR169i
(22 sentences)

Stem-loop

   ucuu   u   -         u    u     cuccauug    a      c    aa     g 
5'     guu ggu agccaagga gacu gccug        uagg gguuuc gaaa  augca a
       ||| ||| ||||||||| |||| |||||        |||| |||||| ||||  |||||  
3'     cag uca ucgguuccu cuga cggac        gucc ccaaag cuuu  uaugu c
   --gu   u   a         -    -     uuugcuuu    -      -    aa     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000337.2: 31302443-31302565 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR169i

• ptc-MIR169i: CM000337.2: 31302443-31302565 [-]
• ptc-MIR169j: CM000337.2: 31302159-31302295 [-]

Database links

• miRBase Tracker:MI0002259

Mature sequence ptc-miR169i

• Accession: MIMAT0001965
• Sequence: 11 - uagccaaggaugacuugccug - 31
• Evidence: by similarity; MI0000976

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).