Stem-loop sequence ptc-MIR169j

Accession

MI0002260 (change log)

Description

Populus trichocarpa miR169j stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

9 open access papers mention ptc-MIR169j
(19 sentences)

Stem-loop

   ucu    -uga          u    u     - -ua uu           ugcaaagagaucagaaccaa 
5'    uguu    uagccaagga gacu gccug c   c  gcaagaguuuc                    a
      ||||    |||||||||| |||| ||||| |   |  |||||||||||                    u
3'    acag    aucgguuccu cuga cggac g   g  uguucucaaag                    a
   ---    uccg          -    -     c uua uu           uaauguauauuaagguacgu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000337.2: 31302159-31302295 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR169j

• ptc-MIR169i: CM000337.2: 31302443-31302565 [-]
• ptc-MIR169j: CM000337.2: 31302159-31302295 [-]

Database links

• RNAcentral:URS000078CBE9_3694
• miRBase Tracker:MI0002260

Mature sequence ptc-miR169j

• Accession: MIMAT0001966
• Sequence: 11 - uagccaaggaugacuugccug - 31
• Evidence: by similarity; MI0000976

References

1. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).