Stem-loop ptc-MIR169o

Accession

MI0002265

Description

Populus trichocarpa ptc-MIR169o precursor miRNA

Literature search

9 open access papers mention ptc-MIR169o
(12 sentences)

Sequence

ccuugcguggAAGCCAAGGAUGACUUGCCUGagaauuuuaggaagguuucuauaugaaagcuuuuuauuaguuuugcaggaagucaaccuuggcuuuccuauag
......(.(((((((((((.((((((.((((((((((.(((((((.((((.....)))).)))))))..)))))).)))))))))).)))))))))))).....

Structure

ccuugc u           A      G    -      -u       g    u 
      g ggAAGCCAAGG UGACUU CCUG agaauu  uaggaag uuuc a
      | ||||||||||| |||||| |||| ||||||  ||||||| |||| u
      c cuuucgguucc acugaa ggac uuuuga  auuuuuc aaag a
-gauau -           a      -    g      uu       g    u 

Annotation confidence Low

Genome context

CM000337.2: 15560467-15560570 [-]

Mature ptc-miR169o

• Accession: MIMAT0001971
• Description: Populus trichocarpa ptc-miR169o mature miRNA
• Sequence: 11 - AAGCCAAGGAUGACUUGCCUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604