Stem-loop sequence ptc-MIR169r

Accession

MI0002268 (change log)

Description

Populus trichocarpa miR169r stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

9 open access papers mention ptc-MIR169r
(12 sentences)

Stem-loop

   gag    -u           au    u      --u    c  -uaa         aa      
5'    gguu  gguagccaagg  gacu gccuau   uccu ca    ggcuuuaaa  gcaug 
      ||||  |||||||||||  |||| ||||||   |||| ||    |||||||||  |||| a
3'    ucga  cuauugguuuc  cuga cggaua   ggga gu    ucgagauuu  uguaa 
   ---    uc           au    -      cuu    a  uaac         gg      

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000351.2: 12082579-12082697 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR169r

• ptc-MIR169u: CM000351.2: 12074209-12074330 [+]
• ptc-MIR169r: CM000351.2: 12082579-12082697 [+]

Database links

• miRBase Tracker:MI0002268

Mature sequence ptc-miR169r

• Accession: MIMAT0001974
• Sequence: 11 - uagccaaggaugacuugccua - 31
• Evidence: by similarity; MI0000212

References

1. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).