Stem-loop sequence ptc-MIR169x

Accession

MI0002274 (change log)

Description

Populus trichocarpa miR169x stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

9 open access papers mention ptc-MIR169x
(12 sentences)

Stem-loop

   ug     uuc        g    c     cguuagcccuugaaagauguuucaaauuuag 
5'   cuguu   uagccaag auga uugcu                               g
     |||||   |||||||| |||| |||||                                
3'   gacag   aucgguuc uacu aacgg                               c
   --     uaa        -    -     acuucggucuuuuuccaagacucguauacgu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000343.2: 6023427-6023544 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR169x

• ptc-MIR169x: CM000343.2: 6023427-6023544 [-]
• ptc-MIR169ad: CM000343.2: 6019640-6019740 [-]
• ptc-MIR169ab: CM000343.2: 6018895-6019001 [-]

Database links

• RNAcentral:URS00007A0AF4_3694
• miRBase Tracker:MI0002274

Mature sequence ptc-miR169x

• Accession: MIMAT0001980
• Sequence: 11 - uagccaaggaugacuugcucg - 31
• Evidence: by similarity; MI0000976

References

1. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).