Stem-loop sequence ptc-MIR171e

AccessionMI0002281 (change log)
DescriptionPopulus trichocarpa miR171e stem-loop
Gene family MIPF0000030; MIR171_1
Literature search

6 open access papers mention ptc-MIR171e
(11 sentences)

Stem-loop 
   gugga   u           ga         a  c    c     a 
5'      aau ugauguuggca  gcucaauca au aaag acuca u
        ||| |||||||||||  ||||||||| || |||| ||||| g
3'      uua gcuauaaccgu  cgaguuagu ua uuuc ugggu g
   -uaaa   c           gc         c  c    u     u
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000337.2: 31797187-31797280 [-]
intergenic
Database links

Mature sequence ptc-miR171e

Accession MIMAT0001987
Sequence

65 -  

ugauugagccgugccaauauc

 - 85

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Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).