Stem-loop sequence ptc-MIR171f

AccessionMI0002282 (change log)
DescriptionPopulus trichocarpa miR171f stem-loop
Gene family MIPF0000030; MIR171_1
Literature search

6 open access papers mention ptc-MIR171f
(11 sentences)

Stem-loop 
   gu u     c         c       c       --aaa   -      -          --aa a 
5'   g cauug gauguuggc cgguuca ucagaga     gac accauu uuuuuucaag    g u
     | ||||| ||||||||| ||||||| |||||||     ||| |||||| ||||||||||    | c
3'   c gugau cuauaaccg gccgagu agucucu     cug ugguaa aagaaaguuc    c a
   cu -     u         u       u       gcugg   g      u          gaaa u
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000338.2: 908813-908942 [+]
intergenic
Database links

Mature sequence ptc-miR171f

Accession MIMAT0001988
Sequence

101 -  

ugauugagccgugccaauauc

 - 121

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Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).