Stem-loop sequence ptc-MIR171j

Accession

MI0002286 (change log)

Description

Populus trichocarpa miR171j stem-loop

Stem-loop

   -cua  uca  a       a a     -   uc  a    cc    uga 
5'     ac   ag uauuggc c guuca ucc  ac gugg  uuga   a
       ||   || ||||||| | ||||| |||  || ||||  ||||    
3'     ug   uc auaaccg g cgagu agg  ug uauc  aacu   u
   accg  -ug  -       c c     u   -u  g    ua    uag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000348.2: 2201526-2201626 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR171j

• ptc-MIR171j: CM000348.2: 2201526-2201626 [-]
• ptc-MIR171m: CM000348.2: 2197358-2197458 [-]

Database links

• miRBase Tracker:MI0002286