Stem-loop sequence ptc-MIR172a

AccessionMI0002287 (change log)
DescriptionPopulus trichocarpa miR172a stem-loop
Gene family MIPF0000035; MIR172
Literature search

8 open access papers mention ptc-MIR172a
(34 sentences)

Stem-loop 
   uuguuu  a                     acauucaaauagauguaccgaagcuauacagcua 
5'       gc ggugcagcaucaucaagauuc                                  u
         || |||||||||||||||||||||                                   
3'       cg cuacgucguaguaguucuaag                                  g
   -aauac  a                     aguggauguuacuaauauguaacgaucgaucgau
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000344.2: 1941920-1942048 [+]
intergenic
Database links

Mature sequence ptc-miR172a

Accession MIMAT0001993
Sequence

100 -  

agaaucuugaugaugcugcau

 - 120

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Evidence by similarity; MI0000215

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).