Stem-loop sequence ptc-MIR172c

AccessionMI0002289 (change log)
DescriptionPopulus trichocarpa miR172c stem-loop
Gene family MIPF0000035; MIR172
Literature search

8 open access papers mention ptc-MIR172c
(35 sentences)

Stem-loop 
   uuguuu  a                   --    a     ac   u     gca   ag   g  a 
5'       gc ggugcagcaucaucaagau  ucac uucaa  aga guacg   gcu  cua cu g
         || |||||||||||||||||||  |||| |||||  ||| |||||   |||  ||| ||  
3'       cg cuacgucguaguaguucua  agug aaguu  ucu uaugu   cga  gau ga a
   -aauac  a                   ag    g     --   u     -aa   ca   a  u
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000346.2: 19900042-19900169 [-]
intergenic
Database links

Mature sequence ptc-miR172c

Accession MIMAT0001995
Sequence

99 -  

agaaucuugaugaugcugcau

 - 119

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Evidence by similarity; MI0000215

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).