Stem-loop sequence ptc-MIR319c

AccessionMI0002298 (change log)
DescriptionPopulus trichocarpa miR319c stem-loop
Gene family MIPF0000010; MIR159
Literature search

8 open access papers mention ptc-MIR319c
(30 sentences)

Stem-loop 
   a      u   a     uu          cu      cg  c       uu     -ag  g   ac        u  aa      agaaauuaaggg     u 
5'  augguu aag gagcu  cuucagucca  caugga  gg gaagggu  ggauu   cu ccg  ucauucau ca  cacagu            agcag a
    |||||| ||| |||||  ||||||||||  ||||||  || |||||||  |||||   || |||  |||||||| ||  ||||||            ||||| u
3'  ugcuaa uuc cucga  gaagucaggu  gugucu  uc uuuccua  uuuaa   ga ggc  aguaagug gu  guguua            ucguc g
   -      u   c     gg          uc      cu  u       -c     aua  g   gu        u  aa      ------------     g
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000349.2: 15551280-15551475 [+]
intergenic
Database links

Mature sequence ptc-miR319c

Accession MIMAT0002004
Sequence

168 -  

uuggacugaagggagcuccc

 - 187

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Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).