Stem-loop sequence ptc-MIR390a

AccessionMI0002305 (change log)
DescriptionPopulus trichocarpa miR390a stem-loop
Gene family MIPF0000101; MIR390
Literature search

4 open access papers mention ptc-MIR390a
(16 sentences)

Stem-loop 
   ag       ua         g            ga c     ---aaagucua    u   u 
5'   aaucugu  agcucagga ggauagcgccau  g augac           uguu gag u
     |||||||  ||||||||| ||||||||||||  | |||||           |||| ||| a
3'   uugggua  uugaguccu ucuaucgcggug  c uacug           acaa cuc a
   --       uc         a            -a -     accuaacuaaa    -   u
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Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000337.2: 27693951-27694069 [+]
intergenic
Database links

Mature sequence ptc-miR390a

Accession MIMAT0002011
Sequence

11 -  

aagcucaggagggauagcgcc

 - 31

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Evidence by similarity; MI0001001

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).