Stem-loop sequence ptc-MIR393b

AccessionMI0002310 (change log)
DescriptionPopulus trichocarpa miR393b stem-loop
Gene family MIPF0000083; MIR393
Literature search

3 open access papers mention ptc-MIR393b
(6 sentences)

Stem-loop 
   ag      c            c    u     c    guccc 
5'   aggagg auccaaagggau gcau gaucc gagu     u
     |||||| |||||||||||| |||| ||||| ||||     g
3'   uccucc uagguuucccua cgua cuagg uuua     g
   --      u            u    -     u    auacc
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000346.2: 17888037-17888120 [-]
intergenic
Database links

Mature sequence ptc-miR393b-5p

Accession MIMAT0002016
Previous IDsptc-miR393b
Sequence

11 -  

uccaaagggaucgcauugauc

 - 31

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Evidence experimental; miRNAseq [2]

Mature sequence ptc-miR393b-3p

Accession MIMAT0022909
Sequence

58 -  

aucaugcuaucccuuuggauu

 - 78

Get sequence
Evidence experimental; miRNAseq [2]

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
2
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).