Stem-loop sequence ptc-MIR394a

AccessionMI0002313 (change log)
DescriptionPopulus trichocarpa miR394a stem-loop
Gene family MIPF0000100; MIR394
Literature search

1 open access papers mention ptc-MIR394a
(3 sentences)

Stem-loop 
        u               uuu  u         -u      u c            -ucu      a uac 
5' ucaug ggguuuugcaaaggg   cu acagaguuu  uuggca u uguccaccucca    guagaa c   a
   ||||| |||||||||||||||   || |||||||||  |||||| | ||||||||||||    |||||| |    
3' agugc cccaaaauguuucuc   gg ugucucgag  aaccgu a acggguggaggu    caucuu g   a
        u               ucu  u         uc      c u            cuuu      - uug
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000338.2: 831734-831880 [-]
intergenic
Database links

Mature sequence ptc-miR394a-5p

Accession MIMAT0002019
Previous IDsptc-miR394a
Sequence

38 -  

uuggcauucuguccaccucc

 - 57

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Evidence by similarity; MI0001006

Mature sequence ptc-miR394a-3p

Accession MIMAT0006783
Sequence

117 -  

cuguuggucucucuuuguaa

 - 136

Get sequence
Evidence experimental; cloned [2]

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
2
PMID:18363789 "Stress-responsive microRNAs in Populus" Lu S, Sun YH, Chiang VL Plant J. 55:131-151(2008).