Stem-loop sequence ptc-MIR394b

AccessionMI0002314 (change log)
DescriptionPopulus trichocarpa miR394b stem-loop
Gene family MIPF0000100; MIR394
Literature search

1 open access papers mention ptc-MIR394b
(2 sentences)

Stem-loop 
        u  a   a        uuu  u         -a      u c           uaucuuu   a  ua 
5' ucaug gg uuu gcaaaggg   cu acagaguuu  uuggca u uguccaccucc       aga au  g
   ||||| || ||| ||||||||   || |||||||||  |||||| | |||||||||||       ||| ||   
3' agugc cc aaa uguuucuc   gg ugucucgag  aaccgu a acggguggagg       ucu ua  a
        u  c   a        ucu  u         cc      c u           uauacuu   c  ua
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000341.2: 24701276-24701422 [+]
intergenic
Database links

Mature sequence ptc-miR394b-5p

Accession MIMAT0002020
Previous IDsptc-miR394b
Sequence

38 -  

uuggcauucuguccaccucc

 - 57

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Evidence by similarity; MI0001006

Mature sequence ptc-miR394b-3p

Accession MIMAT0006784
Sequence

117 -  

cuguuggucucucuuuguaa

 - 136

Get sequence
Evidence experimental; cloned [2]

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
2
PMID:18363789 "Stress-responsive microRNAs in Populus" Lu S, Sun YH, Chiang VL Plant J. 55:131-151(2008).