Stem-loop sequence ptc-MIR395d

AccessionMI0002318 (change log)
DescriptionPopulus trichocarpa miR395d stem-loop
Gene family MIPF0000016; MIR395
Literature search

5 open access papers mention ptc-MIR395d
(7 sentences)

Stem-loop 
   g  u c  ua         ug         c       --uuccga  aaa 
5'  ug c cc  gaguuccuc  agcacuuca ugggaau        uc   u
    || | ||  |||||||||  ||||||||| |||||||        ||    
3'  ac g gg  cucaagggg  uugugaagu auccuua        ag   g
   -  u u  uc         gu         c       cuauuaug  aaa
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000342.2: 8410822-8410922 [+]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR395d
ptc-MIR395cCM000342.2: 8406701-8406801 [+]
ptc-MIR395dCM000342.2: 8410822-8410922 [+]
Database links

Mature sequence ptc-miR395d

Accession MIMAT0002024
Sequence

72 -  

cugaaguguuugggggaacuc

 - 92

Get sequence
Evidence by similarity; MI0001010

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).