Stem-loop sequence ptc-MIR395e

AccessionMI0002319 (change log)
DescriptionPopulus trichocarpa miR395e stem-loop
Gene family MIPF0000016; MIR395
Literature search

5 open access papers mention ptc-MIR395e
(7 sentences)

Stem-loop 
   cu   c             ug c       c     ---cuauaa          cg 
5'   guc cccggaguuuccc  a cacuuca ugggg         uucuacucuu  u
     ||| |||||||||||||  | ||||||| |||||         ||||||||||  g
3'   cgg gggucucaagggg  u gugaagu acucc         gagaugggaa  u
   -a   u             gu u       c     uucccaacg          uu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000352.2: 13792278-13792390 [-]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR395e
ptc-MIR395iCM000352.2: 13797871-13797972 [+]
ptc-MIR395gCM000352.2: 13793446-13793547 [+]
ptc-MIR395eCM000352.2: 13792278-13792390 [-]
Database links

Mature sequence ptc-miR395e

Accession MIMAT0002025
Sequence

84 -  

cugaaguguuugggggaacuc

 - 104

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Evidence by similarity; MI0001012

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).