Stem-loop sequence ptc-MIR395i

AccessionMI0002323 (change log)
DescriptionPopulus trichocarpa miR395i stem-loop
Gene family MIPF0000016; MIR395
Literature search

5 open access papers mention ptc-MIR395i
(7 sentences)

Stem-loop 
   g  u c  ua         ug         a      ---------    c  uc 
5'  ug c cc  gaguuccuc  agcacuuca ugggga         ucuu ca  g
    || | ||  |||||||||  ||||||||| ||||||         |||| ||   
3'  ac g gg  cucaagggg  uugugaagu auccuu         agaa gu  a
   -  u u  uc         gu         c      acuauuaug    a  cc
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000352.2: 13797871-13797972 [+]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR395i
ptc-MIR395eCM000352.2: 13792278-13792390 [-]
ptc-MIR395gCM000352.2: 13793446-13793547 [+]
ptc-MIR395iCM000352.2: 13797871-13797972 [+]
Database links

Mature sequence ptc-miR395i

Accession MIMAT0002029
Sequence

73 -  

cugaaguguuugggggaacuc

 - 93

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Evidence by similarity; MI0001010

References

1
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).