Stem-loop sequence ptc-MIR397c

Accession

MI0002334 (change log)

Description

Populus trichocarpa miR397c stem-loop

Literature search

2 open access papers mention ptc-MIR397c
(3 sentences)

Stem-loop

   caaguuua    -    -           gau   a 
5'         guuc aaug aguggagcuuu   gac a
           |||| |||| |||||||||||   ||| u
3'         caag uuau ucaucucgaaa   uug u
   --guauaa    c    g           auu   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000340.2: 2949324-2949394 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0002334

Mature sequence ptc-miR397c

• Accession: MIMAT0002040
• Sequence: 11 - ucaaugaguggagcuuugaug - 31
• Evidence: by similarity; MI0001015

References

1. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).