Stem-loop sequence ptc-MIR398b

AccessionMI0002336 (change log)
DescriptionPopulus trichocarpa miR398b stem-loop
Gene family MIPF0000107; MIR398
Literature search

4 open access papers mention ptc-MIR398b
(13 sentences)

Stem-loop 
   a    u   a    a       u  cu      u  cg      
5'  gggu ccg cagg gcggccu gg  cacaug gg  gcauc 
    |||| ||| |||| ||||||| ||  |||||| ||  |||| c
3'  uucg ggc gucc cgcugga uc  guguac uc  uguaa 
   c    -   c    c       c  uu      u  -a
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000337.2: 26837928-26838012 [-]
intergenic
Database links

Mature sequence ptc-miR398b

Accession MIMAT0002042
Sequence

56 -  

uguguucucaggucgccccug

 - 76

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Evidence by similarity; MI0001018

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).