Stem-loop sequence ptc-MIR399b

AccessionMI0002339 (change log)
DescriptionPopulus trichocarpa miR399b stem-loop
Gene family MIPF0000015; MIR399
Literature search

4 open access papers mention ptc-MIR399b
(9 sentences)

Stem-loop 
   ggugc      auuaca       c    a        ca   acuaagacacgcaauaucuaac 
5'      aguugc      gggcaag uucc uuggcaug  gcc                      a
        ||||||      ||||||| |||| ||||||||  |||                       
3'      uuaacg      cccguuu gagg aaccguac  cgg                      c
   -cuuc      -----g       a    a        cg   cgugagauguccuuacguaguu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000340.2: 4636054-4636179 [+]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR399b
ptc-MIR399dCM000340.2: 4632342-4632455 [-]
ptc-MIR399bCM000340.2: 4636054-4636179 [+]
ptc-MIR399gCM000340.2: 4640161-4640254 [-]
ptc-MIR399cCM000340.2: 4642730-4642823 [+]
Database links

Mature sequence ptc-miR399b

Accession MIMAT0002045
Sequence

97 -  

ugccaaaggagauuugcccgg

 - 117

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Evidence by similarity; MI0001020

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).