Stem-loop sequence ptc-MIR399d

AccessionMI0002341 (change log)
DescriptionPopulus trichocarpa miR399d stem-loop
Gene family MIPF0000015; MIR399
Literature search

4 open access papers mention ptc-MIR399d
(9 sentences)

Stem-loop 
   --   --   auuacu      u      g       cu  ug -   aua    acuagc 
5'   gga  ugc      gggcaa ucuucu uuggcag  gg  a cuc   cugc      u
     |||  |||      |||||| |||||| |||||||  ||  | |||   ||||      g
3'   ccu  acg      cccguu agaaga aaccguc  uc  u gag   gacg      a
   uu   ua   -----c      u      -       ac  gu u   aac    aauuag
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000340.2: 4632342-4632455 [-]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR399d
ptc-MIR399gCM000340.2: 4640161-4640254 [-]
ptc-MIR399bCM000340.2: 4636054-4636179 [+]
ptc-MIR399dCM000340.2: 4632342-4632455 [-]
Database links

Mature sequence ptc-miR399d

Accession MIMAT0002047
Sequence

85 -  

ugccaaagaagauuugccccg

 - 105

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Evidence by similarity; MI0001023

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).